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The a16z Show

Journal Club: Finding New Antibiotics with Machine Learning, What Coronavirus Structures Tell Us

The a16z Show

a16z

Culture, Business, Science, Disruption, Technology, Software Eating The World, Entrepreneurship, Innovation

4.21.2K Ratings

🗓️ 26 April 2020

⏱️ 24 minutes

🧾️ Download transcript

Summary

with @vijaypande @andy23tran @heyjudka @lr_bio a16z Journal Club covers recent advances from the scientific literature; this inaugural episode for bio covers 2 two different topics: (1) identifying new antibiotics through a novel machine-learning based approach; and (2) characterizing the novel coronavirus causing the COVID-19 pandemic

Transcript

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0:00.0

Hello and welcome to the inaugural episode of the A16Z Journal Club.

0:04.6

I'm Lauren Richardson, one of our bio-editors, and in this episode we'll cover two topics.

0:09.8

First, a novel machine learning-based approach to identify new antibiotics.

0:14.5

And second, we'll discuss two articles characterizing the novel coronavirus causing the

0:19.1

current pandemic.

0:20.7

Journal Club will cover a variety of articles every few weeks, so stay tuned here and will announce its own feed soon.

0:27.0

First up is my conversation with A16Z general partner, VJ Ponde, and Deal partner on the Bio team, Andy Tran.

0:34.0

We dive into a deep learning approach

0:36.0

to antibiotic discovery by Jonathan Stokes,

0:38.0

Regina Barzley, James Collins, and colleagues.

0:41.0

In this article published in Cell, the authors create a novel

0:44.9

machine learning-based method to identify new antibiotic drugs from two large databases.

0:50.3

They then validated one of their candidates, a drug named Hallison, showing that it has excellent antibiotic properties, both in vitro and in two different mouse models of bacterial infection.

1:01.0

Excitingly, Hallison has a distinct structure and appears to have a distinct mechanism of

1:05.2

action from other antibiotics, which is important given the problem of antibiotic resistance

1:10.1

and the need to find new drugs. Our discussion of the paper covers the business of antibiotics,

1:16.0

the methods, and how deep learning can identify novel drug structures,

1:21.0

and other applications for deep learning in drug discovery and development.

1:25.0

But we begin with what made this paper appeal to us.

1:28.0

And the first voice you'll hear is VJs.

1:30.0

A huge tear away from this article was the breadth of experimental work that was done to demonstrate

1:36.5

the accuracy of the predictions involved. And so while there has been a lot of work about using

...

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